Hey D,
I also had the same error in the same spot, although I'm using an earlier version of tracula and Mac OS. This is my first time using tracula for DWI processing so I am a little confused as to how to best troubleshoot this issue.
Any help from the experts would be great!
Thanks,
Doug
Douglas Merkitch Neurological Sciences Rush University Medical Center Email: Douglas_Merkitch@rush.edumailto:Douglas_Merkitch@rush.edu
On Nov 9, 2015, at 6:39 AM, denizzgursel <denizzgursel@gmail.commailto:denizzgursel@gmail.com> wrote:
Dear all,
I am running Tracula preprocessing on NIFTI files. After running the command: trac-all -prep -c I get the error:
... processing /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi_tmp0032 mv -f /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/bvecs /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/bvecs.norot xfmrot /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi.ecclog /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/bvecs.norot /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/bvecs ln -sf /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi.nii.gz /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/data.nii.gz awk: fatal: cannot open file `1000' for reading (No such file or directory) mri_concat --i /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi_frame.nii.gz --mean --o /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/lowb.nii.gz niiRead(): error opening file /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi_frame.nii.gz ninputs = 1 Checking inputs ERROR: reading /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi_frame.nii.gz Linux slow.mri.tu-muenchen.dehttps://urldefense.proofpoint.com/v2/url?u=http-3A__slow.mri.tu-2Dmuenchen.de&d=AwMFaQ&c=XxU8ngzB_WPJXKyiin_6iQ&r=GRn28rC6ssBi3WYtpTHXUZZiKgdhzFrFkzz7_Ref9iw&m=s-VxZTdPXY4S0rcW6kW0YDWh-kEouGyhAJYX2FeNt9k&s=UgWTkYEmMlIN-Hlk4yHyg4ju4GkOcEg-PPBSX3ofvJU&e= 3.7.10-1.40-desktop #1 SMP PREEMPT Thu Jul 10 11:22:12 UTC 2014 (9b06319) x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Mon Nov 9 12:47:20 CET 2015
I checked the folder and 'dwi_frame.nii.gz' file was never created. I attached the trac-all.log file.
Does anybody know how to solve this?
Best,
-- D. <trac-all.log>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.ed...
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