Hello Martin,
everything works fine with the newer versions of files.
Thanks for the help!
Have a wonderful day !
Alex.
Le 04/10/2012 8:04 PM, Martin Reuter a écrit :
You need a newer version of glmfit. This is not the 5.1 I think.
Best Martin
Alex Hanganu al.hanganu@yahoo.ca wrote:
Hello Martin, thanks for the help, I changed all the scripts from that page, but the problem still persisted, so one of our colleagues found that the mri_glmfit from the ReleaseNotes (15.8MB) is for Linux, and we are using mac, so we changed back the mri_glmfit to the old version (6MB), and now we have another error: ----------------------------- SUBJECT pls_pd_base00 Running Within-Subject GLM Writing ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat ... mri_glmfit --y ./pls_pd_base00/surf/lh.long.thickness-stack.mgh --X ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat --allow-zero-dof --no-contrasts-ok --surf pls_pd_base00 lh --label ./pls_pd_base00/label/lh.long.cortex.label --glmdir ./tmp-pls_pd_base00_lh_thickness_CMeqOW/glm ERROR: Option --allow-zero-dof unknown ERROR 255 : mri_glmfit did not work? ----------------------------- Any ideas ? Thanks for the help, Best regards, Alex. ------------------------------------------------------------------------ *De :* Martin Reuter <mreuter@nmr.mgh.harvard.edu> *À :* Alexandru Hanganu <al.hanganu@yahoo.ca>; FS Mailing List <Freesurfer@nmr.mgh.harvard.edu> *Envoyé le :* mercredi 3 octobre 2012 17h30 *Objet :* Re: [Freesurfer] long_mris_slopes error Not sure. Maybe try the updated scripts From http://martinos.org/~mreuter/long <http://martinos.org/%7Emreuter/long>/ Best Martin Alex Hanganu <al.hanganu@yahoo.ca> wrote: Dear Freesurfer Experts, While performing the long_mris_slopes cmd, we receive an error: ------------------------------------------------------------------------ SUBJECT pls_pd_base00 Running Within-Subject GLM Writing ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat ... mri_glmfit --y /Applications/freesurfer/subjects/pls_pd_base00/surf/lh.long.thickness-stack.mgh --X ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat --allow-zero-dof --no-contrasts-ok --surf pls_pd_base00 lh --label /Applications/freesurfer/subjects/pls_pd_base00/label/lh.long.cortex.label --glmdir ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/glm Traceback (most recent call last): File "/Applications/freesurfer/bin/long_mris_slopes", line 732, in <module> run_cmd(cmd,'mri_glmfit did not work?') File "/Applications/freesurfer/bin/long_mris_slopes", line 422, in run_cmd retcode = subprocess.call(args) File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py <http://subprocess.py/>", line 443, in call return Popen(*popenargs, **kwargs).wait() File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py <http://subprocess.py/>", line 593, in __init__ errread, errwrite) File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py <http://subprocess.py/>", line 1079, in _execute_child raise child_exception OSError: [Errno 8] Exec format error ------------------------------------------------------------------------ we changed the mris_calc and mri_glmfit files with the new ones (8.2MB / 15.8MB). Can you please help with this ? Thank you in advance, Sincerely, Alex. ------------------------------------------------------------------------ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Sent from my phone, please excuse brevity.
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