Hi Bruces, It's because i'm doing a comparison between brainsuite and freesrufer. So , I would like to export results of segmentation with Brainsuite and make measurements with FreeSurfer. In Fact, with freesurfer I can have more parameters than with freesurfer. Does it exist another way for get measurements with surfaces ( not generated by Freesurfer)? Thx . VP Date: Wed, 20 Mar 2013 08:38:26 -0400 From: fischl@nmr.mgh.harvard.edu To: pvaltti@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite --> FreeSurfer
Hi Valtina
you can try opening it with freeview if all you want is visualization. If you are trying to produce anatomical stats you will need a lot more than just the pial surface, as mris_anatomical_stats computes many things from an array of inputs (such as the wm.mgz, the aseg.mgz, etc....). Why not just run recon-all and generate them? Bruce
On Tue, 19 Mar 2013, Valtina Pouegue wrote:
I could see the created surface in MAtlab ( 'read_surf,) but I could't open the file in Freesurfer with tksurfer....
VP
From: pvaltti@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: Brainsuite --> FreeSurfer Date: Tue, 19 Mar 2013 22:34:39 -0400
Hi,
I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like to get measurements with FreeSurfer. SO, I convert my rile ( readdfs --> write_surf ) from BRainsuite in Matlab to be usable with Freesurfer. Then, I tried to get measurements with the command .'mris_anatomical_stats' . with the file created previously in Matlab (I called it 'rh.pial'). But I got this error like the system is not able to read wm.mgz. That's why I thought I could juste replace th 'rh.pial' of the segmentation with Freesurfey by the 'rh.pial' created with Matalb and then run mris_anatomical_Stats. IS this a good approximation. Could you recommand another way.
VP
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