14 Nov
2018
14 Nov
'18
4:52 a.m.
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Dear FreeSurfer team,
In order to improve the skull stripping for some of the participants of the sample, I replaced the brainmask.mgz generated in FreeSurfer by the betted image generated from FSL, and I run recon-all again. The problem is that, again, FreeSurfer generated again another brainmask without saving my brainmask and now, I have, again, a bad skull stripped image. Any help with this would be greatly appreciated.
Best regards, Rosalia