External Email - Use Caution
Dear FreeSurfer Developers,
I have preprocessed my functional data using the FsFast function preproc-sess and am now attempting to set up contrasts for first level analyses. I have been able to run mkanalysis-sess, but am receiving an error when I try to run mkcontrast-sess.
I am receiving the following output, when attempting to run mkcontrast-sess:
Command: mkcontrast-sess -analysis task-ARC_events.mni305 -contrast low-baseline-response -a 6
Output:
INFO: Found 15 Non-Null Conditions
INFO: Found 1 Delays
Condition Weights: 0 0 0 0 0 1.00000000000000000000 0 0 0 0 0 0 0 0 0
mkcontrast2 -config task-ARC_events.mni305/low-baseline-response.config -anadir task-ARC_events.mni305 -wcond 0 0 0 0 0 1.00000000000000000000 0 0 0 0 0 0 0 0 0 -sumconds -o task-ARC_events.mni305/low-baseline-response.mat -prestim 0 -wdelay 1 -no-octave
mkcontrast2 7.1.1
cmtxfile task-ARC_events.mni305/low-baseline-response.mat
nconds 15, wcond 0 0 0 0 0 1.00000000000000000000 0 0 0 0 0 0 0 0 0
ndelays 1, wdelay 1
ndelays 1, wpsa
sumconds 1
sumdelays 0
nircorr 0
TER 1.75
rdelta
rtau
cmtxfile task-ARC_events.mni305/low-baseline-response.mat
monly 0
NCond 15
WCond 0 0 0 0 0 1.00000000000000000000 0 0 0 0 0 0 0 0 0
NDelay 1
WDelay 1
TER 1.75
sumconds 1
sumdelays 0
nircorr 0
TPreStim 0
RmPreStim 0
rdelta 0 0
rtau 0 0
ndelays 1
CNorm 1
setwdelay 0
setwcond 0
Matlab file is /tmp/mkcontrast2.21185.m
------- matlab output --------------------
MATLAB: Undefined variable.
ERROR running mkcontrast
mkcontrast2 -config task-ARC_events.mni305/low-baseline-response.config -anadir task-ARC_events.mni305 -wcond 0 0 0 0 0 1.00000000000000000000 0 0 0 0 0 0 0 0 0 -sumconds -o task-ARC_events.mni305/low-baseline-response.mat -prestim 0 -wdelay 1 -no-octave
I have searched the web but was unable to find a solution. Do you have any ideas, what may be causing the error?
1) freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 2) Platform: I am running the script on our university's cluster. The cluster is Linux based but I am unable to provide details regarding the specific Linux version.
Thank you for your help!
Best regards, Bianca Sieveritz