ok. it seems to be an osx problem. using a more recent version on a mac did not work, but the orientations were fine when i ran it on a linux box. i can just use that machine to do the motion correction for all of these subjects.
thanks for your help!
-cate
Yes, the problem is with the matfile. This is rather strange since we generate the matfile. It might be some interaction with osx. Do you have a linux box your can try it out on? This also looks like it might be a fairly old version, can you download a more recent version and see if it works on osx?
doug
Catherine Hartley wrote:
Hi,
I'm still having problems with the rawavg.mgz volume being generated with incorrect orientations. I gave Jenni two 00?.mgz volumes and she was able to generate a correctly-oriented rawavg. Our two log files look very different, but I'm not able to figure out the problem by looking at them. To start with, the i_ras, j_ras, and k_ras value for the 00?.mgz volumes are different in each of our log files. Mine also has several warnings in which it says that it cannot read a matfile, and that the hist.orient value is not valid. I've attached the log files. Any suggestions would be very very welcome.
Thanks in advance, Cate
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