Re: [Freesurfer] Extracting thickness, area and folding values from Qdec

Use 1.3 not 1,3

doug On 03/13/2014 10:12 AM, Dusan Hirjak wrote:

Dear Freesurfer Experts,

I did a correlational analysis in qdec and found several significant clusters after Monte-Carlo simulation (0.05). Now, I would like to extract the mean cortical thickness, area and folding values (peak maximum) of each study subject above the significant cluster.

I tried to run "mri_glmfit-sim --glmdir mc-z.neg.th13.pdf.dat --cache "1,3" --sim-sign neg"

However, I got the ERROR: thresh = 1.3 not completely converted

What am I doing wrong? Any other ideas?

Is the pdf.dat file the right one to use???

Thanks!

DH

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