use mri_segstats. You can look in subjid/scripts/recon-all.log for example command lines (look for the one with wmparc). The command will require a color table. The ones in the log file will use the default table, but this will not have the numbers/names of your lobar regions, so you'll need to create a new color table (or add to the one that is there). doug
On 04/02/2012 12:58 PM, Inês Violante wrote:
Dear all,
I need to obtain the white matter volume per lobe for a given numer of subjects. I started by using the following:
mri_annotation2label --subject<subjid> --hemi rh --lobesStrict lobe
mri_aparc2aseg --s<subjid> --labelwm --annot lobe
and now I have a lobe+aseg.mgz file. How can I create a stats file containing the wm volume for each lobe?
Thank you,
ines
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