Hello Nick,
Thanks! It appears to be working now.
I was running the job on thigpen.
Eliz
On Thu, 25 Aug 2005, Nick Schmansky wrote:
Elizabeth,
Can you try this again after closing your terminal and opening a new one, and sourcing /usr/local/freesurfer/nmr-dev-env
Also, which machine are you using?
Nick
On Thu, 2005-08-25 at 14:34 -0400, Elizabeth Fenstermacher wrote:
Hello,
I was trying to test the autorecon tools that we're planning to use to process some of our newer data. In order to do so I sourced
source /usr/local/freesurfer/nmr-dev-env
Then after setting my subject directory [/space/thigpen/1/users/efenster/example] typed:
recon-all -subjid 002 -autorecon1
It failed during the intensity normalization I believe yielding the following error message
BEGIN failed--compilation aborted at /usr/pubsw/packages/mni/current/bin/nu_correct line 37. ERROR: nu_correct recon-all exited with errors at Thu Aug 25 14:23:21 EDT 2005
When viewing the file it sites as being problematic it seems to be the initialization of one of the MNI tools, specifically the following line
use MNI::Startup qw(nocputimes);
Is there a problem in how I initialized FreeSurfer that created this error and if so how would it be recommended to initialize FreeSurfer in order to use the autorecon tools?
Thank You Eliz
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