https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all#ExpertPreferences-1 Did you guys change how parameters from expert.opts is ingested by recon-all in FS 8.1.0? We have successfully been using the following line in expert.opts file with FS 7:
mris_inflate -n 30 (https://surfer.nmr.mgh.harvard.edu/fswiki/mris_inflate)
But now, FS 8.1.0 recon-all gives an error: ``` mris_inflate -no-save-sulc 30 ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
Not saving sulc Reading 30 ** failed to open GIFTI XML file '30.gii' mrisReadGIFTIdanum: ERROR reading gifti 30.gii [INFO] read, cannot find 30, trying 30.gii ... error: No such file or directory error: mris_inflate: could not read surface file 30 ```
This almost certainly means FS 8.1.0 is not parsing expert.opts line correctly. The "-n 30" is bein parsed as just "30".
Best, Tashrif