-tkr2scanner gives the transform that takes "tkregister RAS" and converts it to scanner RAS. "tkregisterRAS" is the RAS system used by surfaces (it, a vertex xyz is in tkregisterRAS). See http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
On 11/10/2016 09:33 PM, Krieger, Donald N. wrote:
If I run recon-all with both a T1 and a T2 scan and switch t2pial, does mri_info –tkr2scanner give me the transform to the T1 scanner frame of reference?
And if I run recon-all with many T1’s , what does mri_info –tkr2scanner give me then?
Thanks - Don
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer