1 Apr
2010
1 Apr
'10
7:19 p.m.
Janani, For the Failure Detection error, please take a look here: http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/FAQ#Q.Igetanerror... and http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07958.html
For your other questions: 1) FreeSurfer can not work well on data with resolution bigger than 1.5mm^3. You need your input to have good wm/gm contrast in order for the surfaces to be created correctly.
2) I'm not sure what you mean by the first 50 files. In the series? I would imagine the name would matter. Allison
--
On Tue, 30 Mar 2010, Janani Dhinakaran wrote:
> I'm looking through it and also looking at tkregister2 help, and I have some
> questions
> 1)Does Recon only work on fully structural data? If you have funtional
> information on it will recon fail?
> 2)Also- Does it matter what the files are named... for ex- if the first 50
> are named JohnSmith_001_01_01.img and after that they are named
> John^Smith_051_01_01.img... does it make a difference enough to fail recon?
>
>
> On 30 March 2010 11:54, Martin Kavec martin.kavec@gmail.com wrote:
>
>> Hi Jan,
>>
>> the place to look at is
>>
>> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
>>
>> Best,
>>
>> Martin
>>
>> On Tuesday 30 March 2010 12:30:35 Janani Dhinakaran wrote:
>>> Hello everyone,
>>> I wanted to know what I can do to fix this error- it occurs when I'm
>>> running recon-all -all -s Subject
>>>
>>> Tue Mar 30 11:27:20 BST 2010
>>> talairach_avi done
>>> #--------------------------------------------
>>> #@# Talairach Failure Detection Tue Mar 30 11:27:20 BST 2010
>>> /home/s0964091/Desktop/Newdata/JS/mri
>>>
>>> talairach_afd -T 0.005 -xfm transforms/talairach.xfm
>>>
>>> ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
>>> ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
>>> Linux CRIC-0012 2.6.31-20-generic #58-Ubuntu SMP Fri Mar 12 04:38:19 UTC
>>> 2010 x86_64 GNU/Linux
>>>
>>> recon-all exited with ERRORS at Tue Mar 30 11:27:20 BST 2010
>>>
>>> Thank you for your help
>>> Jan
>>
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