Hello, Nick
I tried mri_convert work, glxgears,tksurfer, qdec,freeview. It all respond as "Command not found"
two questions:
1) How should I initiate freesufter evey time i turn on the computer?
2) The other day when I installed freesurfer,i typed “tkmedit bert orig.mgz”, it reponded “Illegal instruction”. If I typed in “recon-all”, it showed “ Required Arguments: -subjid <subjid> -<process directive>…... ”
and the other arguments.
But when i tried the “recon-all” today, it said "Command not found".
Another thing is i installed the freesurfer in my Document folder, instead of the local folder. Although i am the administrator, Ubuntu would not allow me to move any file to the local folder..
Any idea of the problem of freesurfer in my computer?
thanks
Jie
From: nicks@nmr.mgh.harvard.edu To: rememberer@hotmail.com Date: Wed, 23 Feb 2011 18:32:58 -0500 CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] installation problem
does mri_convert work?
glxgears?
tksurfer?
qdec?
freeview?
your installation should work on ubuntu, as it has for other people, so i'm a bit at a loss.
n.
On Thu, 2011-02-24 at 07:12 +0800, Liukarl wrote:
Hello, Nick
the output of uname -a is
"Linux Jie-Liu-Linux 2.6.35-25-generic #44-Ubuntu SMP Fri Jan 21 17:40:48 UTC 2011 i686 GNU/Linux"
thanks
Jie
Subject: Re: [Freesurfer] installation problem From: nicks@nmr.mgh.harvard.edu To: rememberer@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Date: Wed, 23 Feb 2011 11:59:16 -0500
what is the output of
uname -a
On Thu, 2011-02-24 at 00:53 +0800, Liukarl wrote:
Hello, Freesurfer experts:
I emailed some installation problems a couple days ago, but
haven’t
answered yet. I am new to freesurfer and try to install the newest version of freesurfer in Ubuntu system. I closely followed the instructions, and the only difference is that I installed it in my Documents, instead of local folder.
Below is the output after “source
$FREESURFER_HOME/SetUpFreeSurfer.sh”
-------- freesurfer-Linux-centos4-stable-pub-v5.0.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /home/jie/Documents/freesurfer/
FSFAST_HOME /home/jie/Documents/freesurfer//fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /home/jie/Documents/freesurfer//subjects
MNI_DIR /home/jie/Documents/freesurfer//mni
Everything seems fine and I also added the .license file to the<
br>> > freesurfer folder. But when I test it by “tkmedit bert orig.mgz”, it
reponds “Illegal instruction”
If I type in “recon-all”, it will show
“ Required Arguments:
-subjid <subjid>
-<process directive>…... ” and the other arguments.
How to fix the problem and make Fressurfer run? Any help is appreciated. Thanks a lot!
PS: my Ubuntu is 32-bit and choose the 32-bit version Freesurfer.
Jie
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