Dear All, I tried to get an outer pial surface on a previously processed pt subjid, and I got the following error. (recon-all was running another subject in a separate window, for what's worth) Please advise,
Octavian
recon-all -localGI -s subjid
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
Subject Stamp: freesurfer-Linux-centos6_x86_64-dev-20131217 Current Stamp: freesurfer-Linux-centos6_x86_64-dev-20131217 INFO: SUBJECTS_DIR is /usr/local/fs5.3/freesurfer/subjects Actual FREESURFER_HOME /usr/local/fs5.3/freesurfer -rw-rw-r-- 1 ovl ovl 3224039 Nov 17 07:58 /usr/local/fs5.3/freesurfer/subjects/subjid/scripts/recon-all.log Linux ovl-Wild-Dog-Performance 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux /usr/local/fs5.3/freesurfer/subjects/subjid/surf #-------------------------------------------- #@# Local Gyrification Index lh Mon Nov 17 08:03:50 CST 2014
mris_compute_lgi --i lh.pial
================= rm -Rf /usr/local/fs5.3/freesurfer/subjects/subjid/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /usr/local/fs5.3/freesurfer/subjects/subjid/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /usr/local/fs5.3/freesurfer/subjects/subjid/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /usr/local/fs5.3/freesurfer/subjects/subjid/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= *make_outer_surface('/usr/local/fs5.3/freesurfer/subjects/* *subjid/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/usr/local/fs5.3/freesurfer/subjects/**subjid/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit* ================= ERROR:: Too many arguments. Linux ovl-Wild-Dog-Performance 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s subjid exited with ERRORS at Mon Nov 17 08:03:54 CST 2014