Thanks for such quick reply Bruce,
I am saying i am using these file , referring to feesurfer website.
cd $SUBJECTS_DIR/bert/mri freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz -p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
which contains nu.mgz, posterior_Left-Hippocampus.mgz ,posterior_Right-Hippocampus.mgz
when i am using aseg.mgz i am seeing corpus collosum in free viewer, why is it so...?
And I will try to use commands which u referred and get back to you.
cheers Saurabh Thakur,
On Fri, Feb 28, 2014 at 6:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Saurabh
I'm not sure what you mean by "the main volume", but the hippocampus is segmented in the aseg.mgz. You can extract it from there using mri_extract_label or mri_binarize --match
cheers Bruce
On Fri, 28 Feb 2014, Saurabh Thakur wrote:
Hello Freesurfer expert,
I have done Hippo campus segmentation using Freesurfer.
Can u tell me how to extract the only Hippo campus volume from nu.mgz
Why only nu.mgz is used for the main volume--is there some specific reason to use?
Thanks in advance ,
Saurabh Thakur,
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