Dear Anastasia, Barbara & FS-community,
The preprocessing step of Tracula was succesfully completed. However when I try to do the next step: fitting the Ball & Stick model I get another error:
mri@ge24c165:/media/mri/DATAPART11/ROBBY/FREESURFER$ trac-all -bedp -c dmrirc.info INFO: SUBJECTS_DIR is /media/mri/DATAPART11/ROBBY/FREESURFER/T1 INFO: Diffusion root is /media/mri/DATAPART11/ROBBY/FREESURFER/T1 Actual FREESURFER_HOME /usr/local/freesurfer INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /apps/gent/SL6/sandybridge/software/FreeSurfer/5.3.0-centos4_x86_64 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /media/mri/DATAPART11/ROBBY/FREESURFER/T1/INP_080_LISA_V_1/dmri /usr/local/freesurfer/bin/bedpostx_mgh: 131: /usr/local/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected
I have already searched through your mailing list and found a topic where the same problem is discussed:[Freesurfer] FreeSurfer 5.2 TRACULA and FSL 5. I've already checked for the things that were suggested here, but I didn't find a solution. Hoping for some help?
Thanks,
Regards,
Robby