Dear Freesurfer Support
Cut-and-paste the following info into your FreeSurfer problem report: ---------------------------------------------------------------------
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0
Kernel info: Darwin 9.8.0 i386
--------------------------------------------------------------------- Please include the following additional information in your report:
1) subject name 6002 2) the entire command-line executed tkmedit 6002 brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white - segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt &
3) the error message generated n/a
I am trying to edit the subcortical parcellations. I found the wiki instructions, and have followed (I think) to a t. I am unable to effect the Segmentation Brush label by using the Configure Segmentation Brush menu. But regardless of my selection, my drawing is labeled "out of bounds".
I have updated to the most recent version of Freesurfer. I also attempted to use an older version, in case it was a recent bug, incompatible with recon-all done in an older version, etc. However, no version changes have helped. Can someone tell me what I am missing?
FYI - When I select a label type, I have tried both having the "Segmenmtation Brush Info" window open, with my slection highlighted, and highlighting and closing the window. I am hoping I am simply missing a step though obvious to the wiki creator.
Here is the link to the "Editing" instructions I have been following:
http://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData...
4) optionally include the subject's /script/recon-all.log
(n/a)
Thanks for your assistance.
Best regards,
Jennifer Bramen, Ph.D. Assistant Research Neuroscientist UCLA Center for Cognitive Neuroscience Developmental Cognitive Neuroimaging Suite 17-369 740 Westwood Plaza Los Angeles, CA 90095 Phone: (310)525-0865 Fax: (310)206-5518 Email: jbramen@mednet.ucla.edu