Hi Alex,
That command just downloads the fs_install_mcr script into your freesurfer directory. These are two separate steps. Once downloaded, you can run
fs_install_mcr R2012b
as you would normally.
best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience" ladn@email.gwu.edu Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Sunday, May 10, 2020 at 4:58 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Downloading Matlab runtime - ubuntu
External Email - Use Caution Thank you Tim! Also I was wondering, how should I specify the version (i.e. R2012b) of matlab in the code - "cd $FREESURFER_HOME/bin && curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_insta... -o fs_install_mcr && chmod +x fs_install_mcr" ?
All the best, Alex
On Sun, May 10, 2020 at 5:42 AM Tim Schäfer <ts+ml@rcmd.orgmailto:ts%2Bml@rcmd.org> wrote: External Email - Use Caution
You do not have write permission to $FREESURFER_HOME, which is /usr/local/freesurfer/ in your case, it seems. There are 2 options:
1) run the command again but put 'sudo ' in front. This should give you permission to write to that location.
2) install FreeSurfer into your user directory, where you have write access.
I would recommend option 1) if you have sudo access, especially if several users should be able to use the FreeSurfer installation.
Best,
Tim
On May 10, 2020 at 8:02 AM "Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience" <ladn@email.gwu.edumailto:ladn@email.gwu.edu> wrote:
External Email - Use CautionDear Freesurfer experts,
I'm trying to download runtime for ubuntu using the instructions on the website and I'm struggling to resolve this error (seen below). Any ideas on how to fix this? Thank you and hope everyone is safe!
cd $FREESURFER_HOME/bin && curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_insta... -o fs_install_mcr && chmod +x fs_install_mcr % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0Warning: Failed to create the file fs_install_mcr: Permission denied 68 1988 68 1371 0 0 4436 0 --:--:-- --:--:-- --:--:-- 4422 curl: (23) Failed writing body (0 != 1371) alex@ubu19:/usr/local/freesurfer/bin$ fs_install_mcr R2012b % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 177 100 177 0 0 77 0 0:00:02 0:00:02 --:--:-- 77 Archive: installer.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. unzip: cannot find zipfile directory in one of installer.zip or installer.zip.zip, and cannot find installer.zip.ZIP, period.
Thank you, Alex Job Said _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Tim Schäfer
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