Re: [Freesurfer] Checking segmentations with aseg.mgz

-- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayakar1@student.gsu.edu On Mon, Jul 18, 2016 at 4:42 PM, Reema Jayakar reemajayakar@gmail.com wrote: > Hello FS Listserv members, > > With regard to checking amygdala segmentation, is it appropriate to > overlay the aseg.mgz file on the brainmask.mgz? Or should I be overlaying > aseg.mgz on norm.mgz? I am aware of the general rule of thumb that > editing the subcortical segmentations generally is not recommended. > > Also, where can I find documentation on the Freeview options "Resample to > standard RAS space" and > > "Apply registration file". I am trying to understand whether or not it is necessary for me to use any of these options for what I am doing with the subcortical segmentations. > > > Thanks in advance for your help! > > Reema > > > > -- > *Reema Jayakar, M.A.* > Doctoral Candidate - Clinical Neuropsychology > Health Resources and Services Administration (HRSA) Fellow > Department of Psychology > Georgia State University > Email: rjayakar1@student.gsu.edu > >