You can look at this tutorial https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
But if you are using high res, I would run high res stream I put together for the HCP: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
On 5/23/19 2:59 PM, Barletta, Valeria wrote:
Dear Freesurfers,
I tried to launch "recon-all -all" for an high-resolution 7T 0.75 isotropic MEMPRAGE, but the process got stuck on a XL defect in rh, numbered 54, measuring over 20,000 voxels!!
How do I check, and eventually fix, this defect?
Thank you,
Vale
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