Re: [Freesurfer] recon-all did not create all files

External Email - Use Caution

Sure, here it is.

On Thu, Aug 2, 2018 at 12:40 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

can you send it as a text file (not converted to .docx)?

On Thu, 2 Aug 2018, Ortal Nakash wrote:

...

    External Email - Use Caution

I copied it in the attached file. Thank you, Ortal

On Thu, Aug 2, 2018 at 12:23 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Ortal

  you need to send us the recon-all.log, otherwise we don't have the

information we need to help you

  cheers
  Bruce
  On Thu, 2 Aug 2018, Ortal Nakash wrote:


                External Email - Use Caution

        Hi,

        I tried to run the recon-all command on a single participant

on a high memory cluster by typing:

        qlogin -q qlogin.himem.q -l h_vmem=20G,s_vmem=20G


        recon-all -i 103_T1.nii.gz -s 103T -sd
        /data/jag/cnds/ortal/freesurftest/C103/ -all


        - Most of the necessary files were created, however the

aparc.a2009 files and the recon-all.done file were not.

        sincerely,

        Ortal Nakash

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.