12 Apr
2016
12 Apr
'16
10:26 a.m.
Hi Jasmin -
In your dmrirc file , the dcmlist refers to the dicom list. You have put the BVEC/BVAL files there. That is not correct. You need to place the actual pathway to your niftis in this position.
set subjlist = (40 39 36)
# Input diffusion DICOMs (file names relative to dcmroot) # If original DICOMs don't exist, these can be in other image format # but then bvecfile and bvalfile must be specified # set dcmroot = Users/jasminalves/Desktop/data/DTI set dcmlist = (40/DTI.nii.gz DTI.bvec DTI.bval 39/DTI.nii.gz DTI.bvec DTI.bval 36/DTI.nii.gz DTI.bvec DTI.bval) *<- Pathway to NIFTIS HERE*
Hope this helps,
best,
Alan
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*Alan N. Francis PhD*
Instructor - Imaging Neuroscience
Brain Imaging Center
McLean Hospital
Harvard Medical School
115 Mill Street, Belmont, MA 02478
alanf@bwh.harvard.edu ezra_wegbreit@brown.edu
afrancis@mclean.harvard.edu
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