Josh,
The new -3T flag affects the nu correction stage, and specifies a 3T-based target for the talairach alignment, and the existing -mprage flag affects mri_normalize and mri_segment, so you can use both.
Nick
The new Freesurfer has an optional flag to adjust NU intensity correction parameters for images acquired on 3T scanners. There exists also a flag for MPRage sequences.
I use 3T MPRages. What is the recommended use in this case?
Thanks Josh _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer