Please attach your log file from scripts/trac-all.log. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of nayan wadhwani nayanw775@gmail.com Sent: Tuesday, October 22, 2019 1:13 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all error
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Hello Freesurfer,
I did changes asked by you but still error persists. While i am using dicom images why it is asking for NIFTI format. I checked the lib folder also and checked and all the files mention above are there in the folder. Do i need to check something else.
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On 22-Oct-2019, at 8:01 AM, Yendiki, Anastasia <AYENDIKI@mgh.harvard.edumailto:AYENDIKI@mgh.harvard.edu> wrote:
Hi Nayan - Try using /Applications instead of $Applications everywhere. Also, the config file seems to be in rich text format - not sure how that'll work. Try converting it to plain text (if you use mac, from the Format menu of the text editor).
Best, Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of nayan wadhwani <nayanw775@gmail.commailto:nayanw775@gmail.com> Sent: Saturday, October 19, 2019 1:36 AM To: Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] trac-all error
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Hello Freesurfer,
After running recon all script which completed successfully, I ran trac-all command which exited with error and tried running it with dicom files.
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort
ERROR: input file must be in NIfTI format
Darwin EPILEPSY 16.7.0 Darwin Kernel Version 16.7.0: Mon Nov 13 21:56:25 PST 2017; root:xnu-3789.72.11~1/RELEASE_X86_64 x86_64
trac-preproc exited with ERRORS at Fri Oct 18 22:13:02 PDT 2019
And please help me the correct config the one I created, I am attaching it below to try it with .nii files
Thanks and Regards Nayan Wadhwani _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer