You can create a point set. I would recommend creating an initial point set in freeview, saving it (json), then looking at that to get the format, then create a new json with your points. If you have them as a binary map in nifti, you can load that with your anatomical (assuming the nifti volume has the proper geometry), then view as a segmentation, then show the segmentation as an isosurface in 3d (you'll probably want to voxelize it).
On 3/22/2023 2:08 PM, Kerezoudis, Panagiotis, M.D., M.S. wrote:
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Hi,
I have completed the Freesurfer segmentation and parcellation in a patient that has intracranial electrodes.
I also have the electrode locations in various file formats (tsv, nii and pom).
Is there a way to visualize their location in Freeview and particularly in 3D?
For example, for 2D I can easily do that with microGL.
Thank you very much in advance!
Best,
Panos Kerezoudis
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer