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Hi Freesurfer experts,
I've done running a longitudinal analysis pipeline for individuals in 3 groups. Now, I need to get prepared for QDEC group analysis. I cp all groups of individuals to the same directory and each subject contains one base and multiple long files. I want to run "-qcache" option for the prep. Got a couple of questions here? 1) I failed to run "recon-all -s 001 -qcache", said: "missing 001/surf/lh.thickness", so for a longitudinal run, should I run "recon-all -s 001_base -qcache" or 'recon-all -s 001_ses-1.long.001_base" instead? 2) Where will the output be stored for each individual? 3) To run multiple qcache in parallel, will the following code generate the same outputs as that I run each individually: " find . -type d -name '*_base" -exec bash -c 'for i in "$@"; do recon-all -s "$i" -qcache; done". Thank you so much!
Best, Qi