As a follow up, I should say that once the data are "conformed" (ie, the orig volume and after), you should not reorient. It will display correctly, but it could mess up later parts of the stream. The input can be oriented any way, as long as the orientation information in the input file format is correct.
doug
On Thu, 27 Apr 2006, Doug Greve wrote:
No, tkmedit and the rest of freesurfer read in the orientation info and adjust the display to assure that the subject's left side shows up on the right ("radiological"), that superior is at the top, etc. As long as the orientation info is correct ...
doug
On Thu, 27 Apr 2006, adam walczak wrote:
Hello,
I was wondering if FreeSurfer needed the data to be in a specific display convention (neurological or radiological). I have to do some manipulation of our images in order to get them in the correct space and was wondering if the program needed the data in a specific display type to work properly.
I noticed that tkmedit displays in the radiological convention.
Thank you,
Adam
adam
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