Hi Bruce,
I converted the images with MRIconvert, then I swapped them in FSL with swapdim. I checked the images by opening the original dicoms and the converted niftis, and then visually compared them (since the heads are not very symmetrical that was not too hard).
Best,
Marja
On Tue, Jun 14, 2016 at 12:35 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Marja
how did you swap them? And more importantly, how did you check that the orientations were correct after conversion?
cheers Bruce
On Mon, 13 Jun 2016, Marja Caverlé wrote:
Hi guys,
Just a quick question; I have converted my original DICOMs into niftis. After the conversion I manually checked whether the orientations were still the same, and they were not, so I swapped them. After this I did a recon -all. A lot of my results are at one side while I expected them in the other hemisphere. Is there any chance that the recon -all swapped left and right? How to check for this? I just want to be sure that I am really talking about the right hemisphere.
Thanks!
Best,
Marja
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