Hi Bruce,
Please find attached recon-all.log file and I used following command to run the base:
recon-all -base ped1_base -tp ped1_0 -tp ped1_1 -tp ped1_2 -tp ped1_3 -tp ped1_4 -all
Following is the screen shot of output showing the error:
[cid:8a9a6e17-acc5-4ddf-bb4e-c7c1ad8d8b3d]
Thanks, Sneha ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Monday, August 7, 2017 1:43:01 PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case
Hi Sneha
can you send us the commad you ran and the full screen output inluding the error and also the recon-all.log?
cheers Bruce
On Mon, 7 Aug 2017, Sneha Pandya wrote:
Dear team,
I have completed cross-sectional pipeline on my pediatric case with a baseline and 4 follow up time points between 4-7 years of age. However, I was not able to run longitudinal pipeline on it as the base template creation failed with some topological errors. I assume this failure is due to large eTIV changes within 4-7 years of age.
I wanted to compare cortical thickness map of follow-up time points to its baseline using qdec. However, I was not able to as running qdec with single subject failed with 0 dof error. Can you'll please suggest how can I generate cortical thickness map between follow-up and baseline scans for this subject if qdec is not an option.
Thanks,
Sneha
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