12 Feb
2013
12 Feb
'13
11:29 a.m.
Hi,
I'm using the -gcut flag for the first time and I've noticed that the skull stripping process is still leaving small fragments of dura behind. Will this affect my surfaces? Should I manually edit the brainmask volume to remove as much of these fragments as I can?
Also, should I only be concerned about the GM and cerebellum edges when checking for over-aggressive cutting, or are other brain structures important as well, e.g. optic chiasm?
Thanks,
--G