External Email - Use Caution
Hello Donato, I think it should be “git-annex” and not “git annex”. You can check where a command lives with the “which” command though your path could be different than mine. $ which git-annex/usr/local/bin/git-annex You can add an INSTALL_PREFIX to the cmake command with -DCMAKE_INSTALL_PREFIX=/path/to/installation_directory After you do the build under the ./fresurfer tree with the cmake and make commands, you would then type “make “install” and the built files will get installed to live under the /path/to/installation_directory. But we do not recommend building and installing the current source for public use since what you will get is not a tested release and could also be unstable. You can instead download the latest release (freesurfer 7.1..1 from 7/2020) and earlier releases from the page https://secure-web.cisco.com/1gF066AaN_OzNBu1A3-GQNZIltUL8zt7uzu-nYrgxs3H4YM... Someone with root/sudo privileges can install the *.rpm file which has the benefit of checking system packages needed to run freesurfer are installed on the system. Otherwise you can download the *.tar.gz archive and expand it to live anywhere you have write permission. - R.
On Mar 4, 2021, at 06:00, Donato Romano <d.romano20@studenti.uniba.it> wrote: External Email - Use Caution Hello FreeSurfer Developers,I'm trying to install FreeSurfer by source code on a distributed infrastructure. I'm following the FreeSurfer Builde Guide and when I run the command $ git annex get , the output is 'annex' isn't a command git.Can you send me a step-by-step guide to download and install FreeSurfer?Thank you._______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer On Mar 4, 2021, at 06:00, Donato Romano <d.romano20@studenti.uniba.it> wrote: External Email - Use Caution Hello FreeSurfer Developers,I'm trying to install FreeSurfer by source code on a distributed infrastructure. I'm following the FreeSurfer Builde Guide and when I run the command $ git annex get , the output is 'annex' isn't a command git.Can you send me a step-by-step guide to download and install FreeSurfer?Thank you._______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer