[Freesurfer] (no subject)

Hi mailing list,

I have encountered this problem in Freesurfer a number of times now and I wondered if any of you had any solutions.

It seems that sometimes after a recon-all has been run, there is a large overlap of the pial boundary and wm boundary, in the same region each time near the lateral ventricles (it can be on either hemisphere or both). I have attached a print screen of the issue, this time in the LH. As you can see, we have tried adding CPs and have also added WM, but after re-running it, the problem still exists. We have also tried running the randomness, but this has had no effect.

Any suggestions as to what we could do to fix this would be great - thank you!