Hi Mohamad
recon-all requires a T1, so use it. If the T2 is good quality you can use it to avoid dura in a subsequent invocation of recon-all with the -T2pial flag
cheers Bruce
On Fri, 17 Oct 2014, Alshikho, Mohamad J. wrote:
Hi FS Experts,
The T1 and T2 images in my data set are as the attached images. Kindly do you recommend that I do segmentation for the white matter using recon-all on my T1 or T2 images or to the output of a registration process between T1 and T2 I highly appreciate any recommendation Looking forward to learn from you and thank you Mohamad