[Freesurfer] Recon-all error

Hello,

I am using recon-all, and it gives me error and exits and I cannot understand why. I would appreciate it if you give me a clue why it's not working.

I've written a piece of script (recon.bash attached) to be copied to the subject's folder, and when run it should automatically go through the analysis pipeline, but it gives me the error and exits.

Thank you very much, Emad

Emad Ahmadi, MD ------------------------------------------------ Postdoc Research Fellow Department of Radiology Massachusetts General Hospital Harvard Medical School

25 New Chardon Street, Suite 400 Boston, MA 02114 Tel: 617 726 5237 Email: emad@nmr.mgh.harvard.edu