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Dear Freesurfer developers, In the link below, you see two brains belonging to the same subject:
https://secure-web.cisco.com/13BPz3RKb4ouXjNEzLehwPZTK95KDfvYg0N-g887u-w7ftv... [https://secure-web.cisco.com/1B08cXHTWamf2XLl-Do2M2Y2jFkmx7hn93F8dK1GfF1Mv6r...https://secure-web.cisco.com/13BPz3RKb4ouXjNEzLehwPZTK95KDfvYg0N-g887u-w7ftvuT3XYGAkTFceTbXiWCr6SNywbE8fcYjdVjN5ilNvHSmxSGWIlJ4e3EY93BEtyFovUNqHiubNxANK-VQkFfB08mlvWdjOSDrAj3wpUGTOU4bDhdASUiFNGP3Qr6iVkC6Mr5aZDXf0TB1KFC1LIM6XdLNKt6h9H-u-IBO9Tk52el1Mw-uU6vhDGCP9KJm0YdqioUjFCwFe1WFkE0tIdCRPJnnO0uVbXkZZq-gGKQJ8ipLvzHCK3PRTeWj5ov49VwfX4K8fJXSq-InNeWjDBXeaxgchX-rw7zfFyreXocJw/https%3A%2F%2Fwww.dropbox.com%2Fs%2Fc2gsp8h8jj7c93d%2FScreen%2520Shot%25202022-01-26%2520at%25201.40.23%2520PM.png%3Fdl%3D0 Screen Shot 2022-01-26 at 1.40.23 PM.pnghttps://secure-web.cisco.com/13BPz3RKb4ouXjNEzLehwPZTK95KDfvYg0N-g887u-w7ftvuT3XYGAkTFceTbXiWCr6SNywbE8fcYjdVjN5ilNvHSmxSGWIlJ4e3EY93BEtyFovUNqHiubNxANK-VQkFfB08mlvWdjOSDrAj3wpUGTOU4bDhdASUiFNGP3Qr6iVkC6Mr5aZDXf0TB1KFC1LIM6XdLNKt6h9H-u-IBO9Tk52el1Mw-uU6vhDGCP9KJm0YdqioUjFCwFe1WFkE0tIdCRPJnnO0uVbXkZZq-gGKQJ8ipLvzHCK3PRTeWj5ov49VwfX4K8fJXSq-InNeWjDBXeaxgchX-rw7zfFyreXocJw/https%3A%2F%2Fwww.dropbox.com%2Fs%2Fc2gsp8h8jj7c93d%2FScreen%2520Shot%25202022-01-26%2520at%25201.40.23%2520PM.png%3Fdl%3D0 Shared with Dropbox http://secure-web.cisco.com/1qgxtofGxpoR7Sqc5YpeFwa6ndZVhgCVEL8DwdalIfXi80qU...
while one of them is reconstructed with FS7.2, the other one is reconstructed with a pipeline that uses another code for extracting brain tissue (BET Mask) and then use FS6 for the remaining stages of the reconstruction.
While the final result of both constructions matches in most aspects, they don't occupy the same coordinates in space. Is there a way that we can match the coordinates of each voxel for two images? Or in other words make them compatible.
The Platform we use is CentOS7 .
Thanks and all the best, Ela