Hi Clara
the -cp and -wm both get run by -cp. So run that until the volume stream is done and the orig surfaces are created (or just before if you want), then run the perhemi I think.
cheers Bruce
On Fri, 12 Feb 2016, Clara Kühn wrote:
Dear FreeSurfer experts,
I hava a question regarding rerunning the recon-process. I have cases where I do manual edits on a brain and only set a few control points on one hemisphere but white matter edits on the other. I would then run the -cp flag for one hemisphere and the -wm flag for the other. My question is, can that happen simultaneously, i.e. in different terminals or should I do one after the other because of some sort of interferences?
Also, I was wondering if it is possible to save surfaces from a BASE under a different name, run the recon-process again and compare the new surfaces with the old ones and then pick, if they are better, the old ones to go on to calculate the LONGs?
Thanks, Clara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer