Hi Bruce-
Is this fix going to be put on the site as a patch/fix download (e.g., ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos4_x86_64/) or distributed on a per-user need?
Thanks, Wil ____________________________________ William Irwin | Brain Imaging Coordinator UCSF | Memory and Aging Center 350 Parnassus Avenue, Suite 905 San Francisco CA 94143-1207 wirwin@memory.ucsf.edu | memory.ucsf.edu p: 415.476.1680 | f: 415.476.1816
|-----Original Message----- |From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] |Sent: Thursday, August 04, 2011 12:39 PM |To: Christopher Luna |Cc: freesurfer@nmr.mgh.harvard.edu |Subject: Re: [Freesurfer] mri_segment optional flags problem | |oops, I just fixed that. If you let us know what software/hardware env you are |using we'll give you an updated binary. | |Bruce | | |On Thu, 4 Aug 2011, Christopher Luna |wrote: | |> Hello, |> I'm trying to run mri_segment with some custom values in the optional |> flags, such as -p for setting the percentage threshold with a float value. |> |> When I run the command though, |> "mri_segment -p 0.6 brain.mgz wm.seg.mgz" |> |> The command properly sets the threshold to 60%, but also takes the "0.6" to |be in the input file name instead of brain.mgz. |> |> Is there another option I'm missing? Or have I unfortunately stumbled upon |a small bug? |> |> Thanks, |> Christopher Luna |> MIT Brain and Cognitive Sciences, Class of 2012 Desimone Lab, McGovern |> Institute for Brain Research MIT Archery Club Alpha Kappa Psi Colony |> at MIT |> |> |>