Dear Doug,
Thanks for the quick response. I will try running the analyses on the command line. I've put the whole error message here if that is of any use and sheds any light to the problem? https://www.dropbox.com/s/1h1wzwidt3k1scu/ErrorMessage.txt
Also, when I try to plot the stats tables using QDEC I get the following error: X Error of failed request: BadAlloc (insufficient resources for operation) I've a screenshot of this error here:https://www.dropbox.com/s/1jf9vd4bms0zv99/x%20error.pdf I get this when I try to plot stats tables for those subjects on whom the analysis works on QDEC. Could this be related to my initial problem? I haven't tried generating these stats tables on the command line yet.
I also have an additional question. When I run the analysis on QDEC (for those subjects it works for) I get one cluster after correcting for multiple comparisons but when I correct for multiple comparisons using the same settings (?) on the command line I get three clusters. The settings I chose on QDEC were Monte Carlo Null Z at 1.3 (0.05) and with the abs setting. The first of these three clusters matches the one I get on QDEC. I used the following command:
mri_glmfit-sim --glmdir directory --cache 1.3 abs --sim-sign abs
Why am I getting different results?
Thank you so much for your time and help.
Best wishes,
Hanna
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Date: Mon, 28 Jul 2014 12:22:16 -0400 From: Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QDEC error and analysis termination during 'concatenating volumes' To: freesurfer@nmr.mgh.harvard.edu Message-ID: 53D678B8.7060904@nmr.mgh.harvard.edu Content-Type: text/plain; charset=UTF-8; format=flowed
I can't make anything out of the error msg gif. Somewhere in there, there should be a mris_preproc command line. Can you try cutting and pasting that into a shell? Trying to do this in the context of qdec will be difficult doug
On 07/25/2014 05:09 AM, Isotalus, Hanna wrote:
Dear FreeSurfer gurus,
I am using QDEC to run my analyses on a large data set. The analysis works fine with up to 1224 subjects but as soon as I add subject 1225 I get an error and the analysis stops. The error displays during 'concatenating volumes' and it just displays file names. When I try to run the analysis on the remaining subjects (around 360 of them) the analysis runs fine ? so I am inclined to think there's nothing wrong with the data files. I've tried rotating the order of subjects and it just doesn't seem to allow me to run the analysis on all of them. Do you have any suggestions?
Here's a link to a screenshot of the error I get:
https://www.dropbox.com/s/08pqnmgep6crmr5/error%20message.gif
I can't actually see all of the error message, here's it from the beginning of what I can see and it continues like that ? displaying all file names I think.
Thank you and best wishes,
?
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