Sometimes using mri_convert will cause the orientation to be off so you
may want to follow those instructions instead.
Allison
--
On Sat, 13 Mar 2010, Bruce Fischl wrote:
> Hi Liang,
>
> you should just be able to use the -rl (reslice like) option in
> mri_convert and give the orig/001.mgz as the target.
>
> cheers
> Bruce
>
> On Fri, 12 Mar 2010, liang
> wang wrote:
>
>> Hi FS experts,
>>
>> I find that FS does make a great skullstrip and extract a perfect brain (ie.
>> brain.mgz). I am thinking to register this brain to MNI152 standard space
>> using FSL. Does anyone know how to transfer the brain (256.^3, 1mm ) to
>> subject-specific native space (224*256*176, 1mm). Thanks in advance.
>>
>> Liang
>>
>>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>