Hi Georgia,
If you downloaded the runtime installer script to FREESURFER_HOME, which it looks like you did, the command should be available to run as long as you’ve also sourced that version of freesurfer, i.e. $FREESURFER_HOME/bin is in your PATH.
If this is the case and it still can’t find the command, you should make sure it actually downloaded correctly. Did the initial command finish with errors? And what’s the output of running:
ls -l $FREESURFER_HOME/bin/fs_install_mcr
best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Georgia Kapizioni geo.kapizioni@gmail.com Date: Monday, February 8, 2021 at 6:06 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Matlab version 2012b installation problem
External Email - Use Caution Dear Freesurfer experts,
I am trying to install Matlab version 2012b but a message appears: command not found.
Firstly, I ran: sudo cd $FREESURFER_HOME/bin && curl MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/fs_insta...https://secure-web.cisco.com/1aj9gsBgtgn7YY-Cjp-4RTDQ9ZZ-zSt6U2uLhCNs0DAt-2NTByXvzSozOvPPBzayeJeLvAT5irVaUjy4aLBMhakn_GAeAmj3xCDf6LD8yJ6sh9CKRMGK62ILhguuZGZ_8bB4I-aI33wlezoPHr9dAWn7IzPvaTnGQHfSnlfKzU8bqP_aePH6KSeoBS33CO5XUWoIPGbpWg-9AQRNzYc__WWNS-u406NNKMS1PqVr0eeF9Glneb8Q7XYckiL3ZeYmkRD7-gySx_Hdw34dXvLorjw/https%3A%2F%2Fraw.githubusercontent.com%2Ffreesurfer%2Ffreesurfer%2Fdev%2Fscripts%2Ffs_install_mcr -o fs_install_mcr && chmod +x Then I typed: fs_install_mcr R2012b and I receive: command not found. My FS version is 6 and I have already install Matlab2016_b on my Mac.
Could you please help me resolve this issue? Thank you in advance, Georgia