I see. You can give freeview a custom lookup table on the command line
cheers Bruce
On Mon, 1 Apr 2019, Emanuel Alvaredo wrote:
External Email - Use Caution
Thanks for the answer Bruce. Is For segmentations. I have run freesurfer for 100 nomal patients. I have calculated standard desviation and mean, then I am comparing the results against a patological patient. So, I would like to open freeview, for example with this command
freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue surf/lh.pial:edgecolor=red surf/rh.white:edgecolor=blue surf/rh.pial:edgecolor=red surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe el,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe el,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse
and show in my custom colores in segments.
Emanuel
On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Emanuel
can you tell us more. For parellations or segmentations? Are you just changing the color of existing parcels/segments? If so you can just import it in freeview cheers Bruce On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > External Email - Use Caution > > Hello! > I would like to ask you about customs colormaps. I have created my > own FreeSurferColorLUT.txt and I would like configure the color map using command line. > Is it possible? > > Thanks in advance. > > Emanuel > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer