Re: [Freesurfer] QSM Hippocampal Segementation

Hi Jessica

if we have T1/PD maps we typically run them through mri_synthesize to create a strongly T1-weighted image that is then passed to recon-all. Can you tell us more about what data you have?

cheers Bruce

On Tue, 28 Jun 2016, Jessica Sevick wrote:

Hello,

I was wondering if it was possible to use the hippocampal subfield segmentation function (for FreeSurfer V 6.0) on QSM images? We are working on quantitative stratification of the hippocampus. If you could let me know any thoughts/suggestions that would be great.

Thanks,

Jessica Sevick MRI Research Assistant Seaman Family MR Research Centre

T: 403.944.8652 C: 587.576.6666 Jessica Sevick T: 403.944.8652 C: 587.576.6666