what is your command line? Or otherwise, how are you visualizing it?
On 07/14/2014 08:09 AM, carina@van-vlodrop.de wrote:
*Gesendet:* Sonntag, 06. Juli 2014 um 22:48 Uhr *Von:* "carina@van-vlodrop.de" carina@van-vlodrop.de *An:* "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu *Betreff:* Aw: Re: [Freesurfer] Fw: Problem with uploading Cluster Simulation data Hi Doug, I have already uploaded a text file of my corrected results from the Monte Carlo Cluster Simulation which reports 15 Clusters (attached picture). There is another file ending with .mgh and the tutorial identifies it to be the overlay (clusterwise corrected map) which I can upload in freeview. In freeview there are the alternatives of uploading a surface or a volume. If I upload the file ending with .mgh as a volume I just recieve a black image with a few numbers on the coordinate plane (attached picture). There is no brain visible. Is it correct to upload the overlay (file ending with .mgh) as a volume or how should I proceed? Do I have to upload a template first and which is the right template? Thank you so much. Yours sincerely, Carina *Gesendet:* Montag, 16. Juni 2014 um 12:45 Uhr *Von:* "Douglas Greve" greve@nmr.mgh.harvard.edu *An:* "carina@van-vlodrop.de" carina@van-vlodrop.de, "free surfer" freesurfer@nmr.mgh.harvard.edu *Betreff:* Re: [Freesurfer] Fw: Problem with uploading Cluster Simulation data
You should be able to view the map results in freeview just as you would any other map. doug
On 6/12/14 12:19 PM, carina@van-vlodrop.de wrote:
*Gesendet:* Dienstag, 10. Juni 2014 um 11:18 Uhr *Von:* "carina@van-vlodrop.de" <carina@van-vlodrop.de> *An:* freesurfer@nmr.mgh.harvard.edu *Betreff:* Problem with uploading Cluster Simulation data Dear freesurfer experts, we are conducting cortical-thickness analysis using freesurfer-4.4.0 and the final analysis with qdec. I have a question concerning the Clusterwise Correction for Multiple Comparison. Is it correct that I have to visualize the results of the Monte Carlo Simulation in freeview? Do I have to upload a special model in freeview before uploading the Cluster Simulation data? Yours sincerely, Carina_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.