That did the trick. Thanks!
Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne alexander.fornito@wh.org.au
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Nick Schmansky Sent: Thu 15/12/2005 9:46 AM To: Fornito, Alexander Cc: Freesurfer Mailing List; Marin Richardson; Sasha Wolosin Subject: RE: [Freesurfer] autorecon2-wm
Alex,
The file is actually called 'recon-all', so try:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/recon-all
After that is copied to your $FREESURFER_HOME/bin directory, be sure to make it executable:
chmod a+x $FREESURFER_HOME/bin/recon-all
Nick
On Thu, 2005-12-15 at 09:24 +1100, Fornito, Alexander wrote:
Hi Doug, I tried to download this but get a "No such file `recon-all-nmr'" message. Cheers, Alex
Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne alexander.fornito@wh.org.au
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Doug Greve Sent: Wed 14/12/2005 6:02 AM To: Sasha Wolosin Cc: freesurfer@nmr.mgh.harvard.edu; Marin Richardson Subject: Re: [Freesurfer] autorecon2-wm
I only recently (ie, last weekish) added a flag to keep the edits when wm is edited with aseg. You can get a new copy of recon all from:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/recon-all-nmr
dogu
Sasha Wolosin wrote:
Dear all,
When we run autorecon2-wm it doesn't seem to be reading the editing done in the Edit WM With ASeg step. Looking at wm.mgz, none of the filling that we see after autorecon2 is present after autorecon2-wm. What's going wrong?
Thanks, Marin
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