yes, if you give it the filename of the first .dcm in the series, the software will find the other slices and create the .mgz.
On Mar 7, 2013, at 9:02 PM, Valtina Pouegue pvaltti@hotmail.com wrote:
Oh yes. It's my mistake. But should I give the adress of the first file of my set for having the result in .mgz. Thanks.
Date: Thu, 7 Mar 2013 16:00:53 -0500 From: greve@nmr.mgh.harvard.edu To: pvaltti@hotmail.com; Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Time
You cannot give recon-all a folder as input. It must be an image file. If you have multiple files, you need multiple -i flags. doug
On 03/07/2013 03:48 PM, Valtina Pouegue wrote:
Hi, Here it is [esther@IP132-207-67-224 ~]$ recon-all -i /home/esther/Freesurfer/freesurfer/subjects/Patient13B -s 13B Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 INFO: SUBJECTS_DIR is /home/esther/Freesurfer/freesurfer/subjects Actual FREESURFER_HOME /home/esther/Freesurfer/freesurfer Linux IP132-207-67-224 3.4.6-2.fc17.x86_64 #1 SMP Thu Jul 19 22:54:16 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux /home/esther/Freesurfer/freesurfer/subjects/13B
mri_convert /home/esther/Freesurfer/freesurfer/subjects/Patient13B /home/esther/Freesurfer/freesurfer/subjects/13B/mri/orig/001.mgz
mri_convert /home/esther/Freesurfer/freesurfer/subjects/Patient13B /home/esther/Freesurfer/freesurfer/subjects/13B/mri/orig/001.mgz corRead(): can't open file /home/esther/Freesurfer/freesurfer/subjects/Patient13B/COR-.info $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/esther/Freesurfer/freesurfer/subjects/Patient13B...
VP
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