Don,
If the file $subjdir/tmp/control.dat exists, then it is automatically added to the mri_normalize and mri_ca_normalize steps. An explicit flag is not needed.
Nick
On Wed, 2007-07-11 at 21:27 -0400, Bruce Fischl wrote:
Hi Don,
Nick actually just recently included something to allow you to pass the control points to mri_ca_normalize, so it can help the subcortical segmentation. Nick: what is the new flag?
cheers, Bruce
On Wed, 11 Jul 2007, Don Hagler wrote:
In recon-all, it says you are supposed to use -autorecon2-cp if you use control points. So I wonder why earlier normalization steps also use control points, such as Norm1 and CANormalize. What effect do the control points have in those steps?
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