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Hi Bruce,
Herewith I attach within the email the command that didn't work when I wanted to reconall. Please have a look. What about the previous dicom that I have sent to you? Please share some thoughts.Thank you very much.
Yours faithfully,
Mustafa
Pada Kamis, 16 Mei 2019 20.18.35 WIB, Bruce Fischl fischl@nmr.mgh.harvard.edu menulis:
Hi Mustafa
can you give us some detials? What didn't work? Can you send us the full command line, screen output and recon-all.log?
cheers Bruce
On Thu, 16 May 2019, mustafa amin wrote:
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Hi Douglas,
I tried to follow the instruction to recon-all the data however it didn't work. Please give some thoughts. Thank you in advance.
Yours faithfully,
Mustafa
Pada Rabu, 17 April 2019 01.02.12 WIB, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu menulis:
Hi Mustafa, why not just run recon-all on the data you have and see whether it looks ok?
On 4/15/19 7:06 AM, mustafa amin wrote:
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Hi Bruce,
I’ve talked to the MRI operator and she told me that the best thing to do the MP-RAGE
protocol is doing the T1 weighted 3D gradient echo with SENSE, she can’t set the TE, TR, TI just like the ADNI protocol asked, though. She can set the thickness to 1 mm. Is this set up okay?
I have the DIACOM files of some subjects with the set up above. Can I send them to you to
look at them?
I am terribly sorry for keep asking this basic question due to we never had experience
doing it in Indonesia.
Many thanks!
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 2 Apr 2019, at 20.49, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
MRI is an amazingly versatile technology that can be messed up in an astonishing number of ways. By far the best thing to do would be to acquire a dataset and run it through recon-all and see if the results look accurate. If you have permission to do so, you are welcome to acquire one and send it to us to try out instead.
cheers Bruce
On Tue, 2 Apr 2019, mustafa amin wrote:
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Dear Freesurfer experts,
I need advice, the MRI operator need to confirm whether she had done the right protocol of MP-RAGE. I have attached the picture that has been taken by her. Please share some thoughts. Thank you in advance.
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