Re: [Freesurfer] Recon-all Correcting Defect 0

See the cerebellum section here

http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Troubleshooting

On 08/23/2016 06:10 AM, Heidi Foo wrote:

Hi Douglas,

Yes it does seem like large parts of the cerebellum have been removed. Is there anything I could do to get around this problem?

Thanks.

Regards, Heidi

On Tuesday, 23 August 2016, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

It looks like there is a very large defect. Check the wm.mgz file
to see
if the cerebellum has been removed.


On 08/21/2016 08:46 AM, Heidi Foo wrote:
> Dear FreeSurfer team,
>
> I apologize for sending this email again. I am currently running
> recon-all for my subjects but for 2 of them, it stops at XL
correcting
> defect. Do you have any ideas how I can deal with this problem?
> Attached the log file for your reference.
>
> Thanks.
>
> Regards,
> Heidi
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <javascript:;>
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

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