Hi Antonio,
What is the complete command you are using the -clean-bm flag with?
Jenni
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From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Gallo, Antonio (NIH/NINDS) [F] Sent: Monday, June 25, 2007 7:30 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] problems with -clean-bm flag
Hi All,
I'm trying to see how much my thickness measures are affected by my manual edits.
When I tried to use the -clean-bm flag with autorecon2 I always got this message:
-1): read error
mri_em_register: could not open mask volume brainmask.mgz.
It seems to me that this flag delete the brainmask.mgz file but doesn't generate a new copy of this file from the brainmask.auto.mgz file.
Could you help me with that?
Thank you in advance,
Antonio
Antonio Gallo, MD
NIB-NINDS-NIH
10 Center Drive
Building 10, Room 5B16
Bethesda, MD, 20892 - USA
ph #: 001-301-402.6391
fax #: 001-301-402.0373
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