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Hello Experts,
I am trying to isolate ROIs using labels #601-#628 however I am getting the following output and it is the same for each label. Any idea what is wrong here?
Thanks for your help!
Akilas-MacBook-Air:B301001 akilasekar$ isolate_labels.csh --vol raparc+aseg.nii --outprefix raparc+aseg_labels --L $label 601
Input file: raparc+aseg.nii
Output prefix: raparc+aseg_labels
mri_convert raparc+aseg.nii raparc+aseg.nii.gz
reading from raparc+aseg.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to raparc+aseg.nii.gz...
Label of interest: 601
Number of voxels and volume for label 601 is = (0, 0.000000mm^3)
mri_binarize --i raparc+aseg.nii.gz --match 601 --o raparc+aseg_labels_label601.mgz
7.1.1
cwd /Users/akilasekar/Desktop/B301001
cmdline mri_binarize --i raparc+aseg.nii.gz --match 601 --o raparc+aseg_labels_label601.mgz
sysname Darwin
hostname Akilas-MacBook-Air.local
machine x86_64
user akilasekar
input raparc+aseg.nii.gz
frame 0
nErode3d 0
nErode2d 0
output raparc+aseg_labels_label601.mgz
Binarizing based on matching values
nMatch 1
0 601
binval 1
binvalnot 0
fstart = 0, fend = 0, nframes = 1
Found 0 values in range
Counting number of voxels in first frame
Found -1 voxels in final mask
Count: -1 -1.642760 5242880 -0.000019
mri_binarize done
Regards, Akila